Bioinformatics

 

Bookmark Page

 

 

Analysis

- Speed Group Microarray Page: Statistical problems involving microarray data

- leelab webpages: Research, Courses, Bioinformatics

- Lei Li's Home Page: Personal site

- Gary Churchill's Statistical Genetics Group: developing statistical and computational tools for investigations of genetics and molecular biology

- TIGR: The Institute for Genomic Research

- The Molecular Science Institute

- Access Excellence: the site for health and bioscience teachers
and learners originally developed by Genentech, Inc.

- Department of Zoology University of British Columbia: Vancouver, B.C. Canada

- Terry Speed's Microarray Data Analysis Group Page 

- Bin Yu: Department of Statistics University of California Berkeley

- Jun Liu's Home Page

- Wong Lab

- Computational Biology: UC Berkeley

- LLNL Genome Division Personnel: Microbial Sequencing, Physical Mapping, Mouse Genomics 

- Leelab SNP Database: SNP stands for "single nucleotide polymorphism

- UCLA Bioinformatics

- Tracy L. Bergemann: Functional Genomics Links

- Labortory for the statistical analysis of microarray data: A center for statistical analysis of data arising from microarrays 

- Gene Expression Data Analysis : Department of Biostatistics & Medical Informatics University of Wisconsin - Madison 

- Wen-Hsiung Li: George Wells Beadle Distinguished Service Professor
Department of Ecology and Evolution

- NCI: ANALYTIC METHODS: Self-Organizing Map

 

 

Courses

陽明生物資訊學程:  http://binfo.ym.edu.tw/edu/

- DNA from the Beginning: An animated primer on the basics of DNA, genes, and heredity.

- About Biotech: Gaphics Gallery

- Genes VII by Benjamin Lewin: The definitive textbook of molecular genetics

- Best Textbooks in Biochemistry Genes VII: Illustration Resource

- High Dimensional Data Analysis: Instructor Ker-Chau Li 

- MIT programming systems research group: Genechips

- The Dolan DNA learning Center

- Foundamentals of Computational Biology and Bioinformatics (II) : Jun Liu 
Wing Hung Wong

- Structure, Function, and Physical Chemistry of Macromolecules: Stephen Harrison and Don Wiley

- Introductory Cell Biology: Hravard Biological Sciences

- Genetics and Genomics: Hravard Biological Sciences

- Genetics and Genomics: Bioinformatics: The Computational Analysis of Genes and Proteins: Walter Gilbert, Christopher Sears

- DNA Microarray Methodology - Flash Animation

- Affymetrix Instrument Systems

- BioTech's life science dictionary

- Dr. Paul's Biology Dictionary Browser and Search

- The dictionary of cell and molecular biology

- Kimball's Biology Pages

- Dr Forsburg's all-purpose Cell Cycle Lecture Notes

- On-Line Biology Book

- Access Excellence: Classrooms of the 21st Century- Teaching & Learning

- McGill: Genetics Course 

- MIT Biology Hypertextbook: Chemistry Review, Large Molecules, Cell Biology, Enzyme Biochemistry, Glycolysis and the Krebs Cycle,...

- BGGN 223 Advanced Genetics: online resources

- BIOL 121 Human Biology: University of Virginia

- Concepts of Genetics: Sixth Edition 

- Genetics in Action: Books collection

- Biology Course: MIT

 

Data

- Pat Brown's lab homepage: part of the Department of Biochemistry and the Howard Hughes Medical Institute, and is located in the School of Medicine at Stanford University

- Celera: mouse genome

- Fold Recognition Related Files and Docs

- Signaling Pathway Database: The Signaling PAthway Database (SPAD) is an integrated database for genetic information and signal transduction systems 

- Yeast cell cycle analysis project: Spellman et al., (1998). Comprehensive Identification of Cell Cycle-regulated Genes of the Yeast Saccharomyces cerevisiae by Microarray Hybridization. Molecular Biology of the Cell 9, 3273-3297.

- Database of Interacting Proteins

- Supplementary Datasets and Prediction Results: Golub et al "Molecular Classification of Cancer: Class Discovery and Class Prediction by Gene Expression Monitoring" 

- Lymphoma/Leukemia Molecular Profiling Project

- Whitehead/MIT Genome Center's Molecular Pattern Recognition web site

- Molecular Pattern Recognition Whitehead/MIT Center for Genome Research: Data Sets 

TIGR Datasets: The Institute for Genomic Research

- Developmental Therapeutics Program NCI/NIH

- Genomics and Bioinformatics Group: Laboratory of molecular pharmacology, NCI

- NCI60 Cancer Microarray Project

- MIPS: munich information center for protein sequences

- The Forsburg Lab pombe Pages

 

 

Disesase

 

Software and Tools

-Bio Teach: The goal of this project is to provide a broad range of information and teaching resources on subjects in biotechnology. The articles will explain issues and techniques that we find important and exciting. ... What is cancer? How does one sequence DNA? What are local BioTech companies in Vancouver working on? What's the big deal about stem cells? What does 'genetic engineering' really mean? ... The list goes on. ( 2004/02/04)

-Bioconductor:

  The Bioconductor project produces an open source software framework that will assist biologists and statisticians working in bioinformatics, with primary emphasis on inference using DNA microarrays.

- CSIRO: Mathematical and information science research area

- Demonstration Software: GenePix Pro 3, MultiClamp Commander,... 

- GenMAPP: Gene Microarray Pathway Profiler

- MDL: Information System, INc

- Eisen lab: Software

- Getting & Installing RasMol

- NCGR: National Center for Genome Resources

- Scanalytics IPLab: Digital Microscopy and Scientific Imaging Program

- Silicon Genetics: GeneSpring 

- Clustering software: XCluster

- Dchip: Model-based analysis of oligonucleotide array data

 

Taiwan

- Bioinformatics: Instructor: P. C. Lyu & J. K. Huang

- Bioinformatics Programs at Natioanl Yang-MIng University

- InfoLIFE: BioTech at National Chiao Tung University

- JENN-KANG HWANG

- Biotech News at Science and Technology Information Center, NSC, ROC 

- Division of Biostatistics and Bioinformatics, National Health Research Institutes

- Resource of Bioinformatics

- 交大生科生物諮詢網

- 生物資訊: 國家衛生研究院的生物資訊 

- Center for Bioscience & Technology, National Cheng Kung University

- Kun-Mao Chao at Natioanl Yang-MIng University

 

 

 

 

Link to other reference

National Human Genome Research Institute (NHGRI):

The Talking Glossary of Genetic Terms to help people without scientific backgrounds understand the terms and concepts used in genetic research.

Medical and biological references: 

PubMed, a service of the National Library of Medicine, provides access to over 12 million MEDLINE citations back to the mid-1960's and additional life science journals. PubMed includes links to many sites providing full text articles and other related resources.

-Bio-Chip 1.http://www.u-vision-biotech.com/

                 2.http://www.biochipmaster.com/

                3.http://www.Gene-Chips.com

                4.http://www.lab-on-a-chip.com/home/index.html

-Bioinformatics Resources: Integrated Retrieval System ,DNA Database, Protein Database, Molecular Visualization, ....

- Bioinformatics: Introductory Articles, Games, Statistics and FAQs 
Leading Research Sites , Societies, Journals and Papers, ... 

- Nature Genetics

- Functional Genomics IPAM Fall 2000: Tutorials and News

- Chemistry & Bioinformatics @ NCHC:  News&Events,Technical Report, 
Available Packages, Online Docs, Downloads, Course Materials 

- Microarray Project: Experimental Protocols, About the Arrayer and Reader, Image Analysis, Database Design and Development, ... 

- Structural Bioinformatics 2000 by P. C. Lyu & J. K. Hwang: Getting Protein Structures, Viewing Protein Structures, Using Protein Tools

- PNAS: Proceedings of the National Academy of Sciences of the
United States of America

- Science Online

- Science magazine: functional genomics

- Gene OntologyTM Consortium: Publications, Documentation, ... 

- NCBI: National Center for Biotechnology Information

- Electronic Scholarly Publishing: Foundations of Classical Genetics

- Cold Spring Harbor Laboratory: A research and educational institution.

- National human Genome Research Institute: Genomic and Genetic Resources on the World Wide Web 

- Microarrays.org: A public source for microarray protocols and software.

- Nature: Genetics

- Microarray and Data Analysis: collection of papers with emphasis on analysis of microarray 

- BioTech: Life Sciences Resources and Reference Tools

- The Cell Death Society: a general overview of apoptosis and programmed cell death

- Biotech Industry Supplier Registry: Manual compilation of biotech suppliers enabling buyers to easily source manufacturers of biotechnology equipment for cell biology, cell culture, genomics, proteomics and more. Site includes new projects, free magazines, jobs, news and events.